Literature

Authors	Year	Title
C. E. Cook, Jimenez, E., Akam, M., Salo, E.	2004	The Hox gene complement of acoel flatworms, a basal bilaterian clade
S. Hoegg, Meyer A.	2005	Hox clusters as models for vertebrate genome evolution
P. W. Reddien, Bermange, A. L., Murfitt, K. J., Jennings, J. R., A. Alvarado, S.	2005	Identification of genes needed for regeneration, stem cell function, and tissue homeostasis by systematic gene perturbation in planaria
A. S. Monteiro, Ferrier D. E.	2006	Hox genes are not always colinear
R. Morgan	2006	Hox genes: a continuation of embryonic patterning?
R. Basto, Lau, J., Vinogradova, T., Gardiol, A., Woods, C. G., Khodjakov, A., Raff, J. W.	2006	Flies without centrioles
D. Duboule	2007	The rise and fall of Hox gene clusters
M. Kulakova, Bakalenko, N., Novikova, E., Cook, C. E., Eliseeva, E., Steinmetz, P. R., Kostyuchenko, R. P., Dondua, A., Arendt, D., Akam, M.	2007	Hox gene expression in larval development of the polychaetes Nereis virens and Platynereis dumerilii (Annelida, Lophotrochozoa)
M. Handberg-Thorsager, Salo E.	2007	The planarian nanos-like gene Smednos is expressed in germline and eye precursor cells during development and regeneration
Y. Wang, Zayas, R. M., Guo, T., Newmark, P. A.	2007	Nanos function is essential for development and regeneration of planarian germ cells
P. D. Olson	2008	Hox genes and the parasitic flatworms: new opportunities, challenges and lessons from the free-living
E. M. Robertis	2008	Evo-devo: variations on ancestral themes
K. A. Gurley, Rink, J. C., Alvarado, A. S.	2008	Beta-catenin defines head versus tail identity during planarian regeneration and homeostasis
A. Hejnol, Martindale M. Q.	2008	Acoel development indicates the independent evolution of the bilaterian mouth and anus
M. Iglesias, Gomez-Skarmeta, J. L., Salo, E., Adell, T.	2008	Silencing of Smed-betacatenin1 generates radial-like hypercephalized planarians
C. P. Petersen, Reddien P. W.	2008	Smed-betacatenin-1 is required for anteroposterior blastema polarity in planarian regeneration
Y. F. Zhong, Butts, T., Holland, P. W.	2008	HomeoDB: a database of homeobox gene diversity
S. M. Robb, Ross, E., Alvarado, A. S.	2008	SmedGD: the Schmidtea mediterranea genome database
D. M. Wellik	2009	Hox genes and vertebrate axial pattern
D. Foronda, Navas, L. F., Garaulet, D. L., Sanchez-Herrero, E.	2009	Function and specificity of Hox genes
M. Berriman, Haas, B. J., LoVerde, P. T., Wilson, R. A., Dillon, G. P., Cerqueira, G. C., Mashiyama, S. T., Al-Lazikani, B., Andrade, L. F., Ashton, P. D.	2009	The genome of the blood fluke Schistosoma mansoni
U. Koziol, Lalanne, A. I., Castillo, E.	2009	Hox genes in the parasitic platyhelminthes Mesocestoides corti, Echinococcus multilocularis, and Schistosoma mansoni: evidence for a reduced Hox complement
B. J. Pearson, Eisenhoffer, G. T., Gurley, K. A., Rink, J. C., Miller, D. E., Alvarado, A. S.	2009	Formaldehyde-based whole-mount in situ hybridization method for planarians
S. Guindon, Delsuc, F., Dufayard, J. F., Gascuel, O.	2009	Estimating maximum likelihood phylogenies with PhyML
J. C. Rink, Gurley, K. A., Elliott, S. A., A. Alvarado, S.	2009	Planarian Hh signaling regulates regeneration polarity and links Hh pathway evolution to cilia
J. Abril, Cebria, F., Rodriguez-Esteban, G., Horn, T., Fraguas, S., Calvo, B., Bartscherer, K., Salo, E.	2010	Smed454 dataset: unravelling the transcriptome of Schmidtea mediterranea
M. Mallo, Wellik, D. M., Deschamps, J.	2010	Hox genes and regional patterning of the vertebrate body plan
B. A. Barber, Rastegar M.	2010	Epigenetic control of Hox genes during neurogenesis, development, and disease
B. J. Pearson, Alvarado A. S.	2010	A planarian p53 homolog regulates proliferation and self-renewal in adult stem cell lineages
J. M. Martin-Duran, Amaya, E., Romero, R.	2010	Germ layer specification and axial patterning in the embryonic development of the freshwater planarian Schmidtea polychroa
M. D. Robinson, McCarthy, D. J., Smyth, G. K.	2010	edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
D. A. Felix, Aboobaker A. A.	2010	The TALE class homeobox gene Smed-prep defines the anterior compartment for head regeneration
I. M. Drobysheva	2010	Replication of basal bodies during ciliogenesis in the epidermis of Prolecithophora and Lecithoepitheliata (Plathelminthes)
P. Rompolas, Patel-King, R. S., King, S. M.	2010	An outer arm Dynein conformational switch is required for metachronal synchrony of motile cilia in planaria
D. E. Wagner, Wang, I. E., Reddien, P. W.	2011	Clonogenic neoblasts are pluripotent adult stem cells that underlie planarian regeneration
P. Lombardo, Miccoli, F. Paolo, Giustini, M., Cicolani, B.	2011	Planarian (Dugesia polychroa) predation on freshwater gastropod eggs depends on prey species, clutch morphology, and egg size
M. Vila-Farré, Sluys, R., Almagro, Í., Handberg-Thorsager, M., Romero, R.	2011	Freshwater planarians (Platyhelminthes, Tricladida) from the Iberian Peninsula and Greece: diversity and notes on ecology
T. Chong, Stary, J. M., Wang, Y., Newmark, P. A.	2011	Molecular markers to characterize the hermaphroditic reproductive system of the planarian Schmidtea mediterranea
E. M. Lázaro, Harrath, A. Halim, Stocchino, G., Pala, M., Baguñà, J., Riutort, M.	2011	Schmidtea mediterranea phylogeography: an old species surviving on a few Mediterranean islands?
A. J. Durston, Jansen, H. J., Rieden, P. I., Hooiveld, M. H.	2011	Hox collinearity—a new perspective
J. M. Martin-Duran, Romero R.	2011	Evolutionary implications of morphogenesis and molecular patterning of the blind gut in the planarian Schmidtea polychroa
T. Sandmann, Vogg, M. C., Owlarn, S., Boutros, M., Bartscherer, K.	2011	The head-regeneration transcriptome of the planarian Schmidtea mediterranea
G. Lauter, Soll, I., Hauptmann, G.	2011	Two-color fluorescent in situ hybridization in the embryonic zebrafish brain using differential detection systems
M. Almuedo-Castillo, Salo, E., Adell, T.	2011	Dishevelled is essential for neural connectivity and planar cell polarity in planarians
G. Kuales, Mulder, K., Glashauser, J., Salvenmoser, W., Takashima, S., Hartenstein, V., Berezikov, E., Salzburger, W., Ladurner, P.	2011	Boule-like genes regulate male and female gametogenesis in the flatworm Macrostomum lignano
J. C. Rink, Vu, H. T., A. Alvarado, S.	2011	The maintenance and regeneration of the planarian excretory system are regulated by EGFR signaling
M. L. Scimone, Srivastava, M., Bell, G. W., Reddien, P. W.	2011	A regulatory program for excretory system regeneration in planarians
J. H. Sir, Barr, A. R., Nicholas, A. K., Carvalho, O. P., Khurshid, M., Sossick, A., Reichelt, S., D’Santos, C., Woods, C. G., Gergely, F.	2011	A primary microcephaly protein complex forms a ring around parental centrioles
A. H. Harrath, Sluys, R., Merzoug, D., Yacoubi-Khebiza, M., Alwasel, S., Riutort, M.	2012	Freshwater planarians (Platyhelminthes, Tricladida) from the Palearctic section of the African continent: new records, with the description of a new species
G. Angela Stocchino, Sluys, R., Manconi, R.	2012	A new species of Dugesia (Platyhelminthes, Tricladida, Dugesiidae) from the Afromontane forest in South Africa, with an overview of freshwater planarians from the African continent

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