Literature

Authors	Year	Title
A. Sánchez Alvarado	2012	Q&A: What is regeneration, and why look to planarians for answers?
A. H. Harrath, Alwasel, S., Zghal, F., Tekaya, S.	2012	Ultrastructure of spermatogenesis and mature spermatozoon of the freshwater planarian Schmidtea mediterranea (Platyhelminthes, Paludicola)
R. M. Labbe, Irimia, M., Currie, K. W., Lin, A., Zhu, S. J., Brown, D. D., Ross, E. J., Voisin, V., Bader, G. D., Blencowe, B. J.	2012	A comparative transcriptomic analysis reveals conserved features of stem cell pluripotency in planarians and mammals
J. Azimzadeh, Wong, M. L., Downhour, D. M., A. Alvarado, S., Marshall, W. F.	2012	Centrosome loss in the evolution of planarians
K. Kunimoto, Yamazaki, Y., Nishida, T., Shinohara, K., Ishikawa, H., Hasegawa, T., Okanoue, T., Hamada, H., Noda, T., Tamura, A., Tsukita, S.	2012	Coordinated ciliary beating requires Odf2-mediated polarization of basal bodies via basal feet
P. W. Holland	2013	Evolution of homeobox genes
H. Zheng, Zhang, W., Zhang, L., Zhang, Z., Li, J., Lu, G., Zhu, Y., Wang, Y., Huang, Y., Liu, J.	2013	The genome of the hydatid tapeworm Echinococcus granulosus
M. Bonito, Glover, J. C., Studer, M.	2013	Hox genes and region-specific sensorimotor circuit formation in the hindbrain and spinal cord
J. N. Witchley, Mayer, M., Wagner, D. E., Owen, J. H., Reddien, P. W.	2013	Muscle cells provide instructions for planarian regeneration
K. W. Currie, Pearson B. J.	2013	Transcription factors lhx1/5-1 and pitx are required for the maintenance and regeneration of serotonergic neurons in planarians
K. Katoh, Standley D. M.	2013	MAFFT multiple sequence alignment software version 7: improvements in performance and usability
R. S. King, Newmark P. A.	2013	In situ hybridization protocol for enhanced detection of gene expression in the planarian Schmidtea mediterranea
J. C. Rink	2013	Stem cell systems and regeneration in planaria
P. Rompolas, Azimzadeh, J., Marshall, W. F., King, S. M.	2013	Analysis of ciliary assembly and function in planaria
H. Zhao, Zhu, L., Zhu, Y., Cao, J., Li, S., Huang, Q., Xu, T., Huang, X., Yan, X., Zhu, X.	2013	The Cep63 paralogue Deup1 enables massive de novo centriole biogenesis for vertebrate multiciliogenesis
J. C. Wolfswinkel, Wagner, D. E., Reddien, P. W.	2014	Single-cell analysis reveals functionally distinct classes within the planarian stem cell compartment
O. Nikolayeva, Robinson M. D.	2014	edgeR for differential RNA-seq and ChIP-seq analysis: an application to stem cell biology
C. E. Adler, Seidel, C. W., McKinney, S. A., Alvarado, A. S.	2014	Selective amputation of the pharynx identifies a FoxA-dependent regeneration program in planaria
A. A. Jord, Lemaitre, A. I., Delgehyr, N., Faucourt, M., Spassky, N., Meunier, A.	2014	Centriole amplification by mother and daughter centrioles differs in multiciliated cells
E. R. Brooks, Wallingford J. B.	2014	Multiciliated cells
L. Ma, Quigley, I., Omran, H., Kintner, C.	2014	Multicilin drives centriole biogenesis via E2f proteins
L. Marie-Orleach, Janicke, T., Vizoso, D. B., Eichmann, M., Scharer, L.	2014	Fluorescent sperm in a transparent worm: validation of a GFP marker to study sexual selection
E. A. Nigg, Cajanek, L., Arquint, C.	2014	The centrosome duplication cycle in health and disease
A. Karami, Tebyanian, H., Goodarzi, V., Shiri, S.	2015	Planarians: an In Vivo Model for Regenerative Medicine
S. D. Cross, Johnson, A. A., Gilles, B. J., Bachman, L. A., Inoue, T., Agata, K., Marmorstein, L. Y., Marmorstein, A. D.	2015	Control of Maintenance and Regeneration of Planarian Eyes by ovoPlanarian Eye Regeneration by ovo
C. B. Albertin, Simakov, O., Mitros, T., Wang, Z. Y., Pungor, J. R., Edsinger-Gonzales, E., Brenner, S., Ragsdale, C. W., Rokhsar, D. S.	2015	The octopus genome and the evolution of cephalopod neural and morphological novelties
S. M. Robb, Gotting, K., Ross, E., Alvarado, A. S.	2015	SmedGD 2.0: The Schmidtea mediterranea genome database
S. J. Zhu, Hallows, S. E., Currie, K. W., Xu, C., Pearson, B. J.	2015	A mex3 homolog is required for differentiation during planarian stem cell lineage development
H. Reuter, Marz, M., Vogg, M. C., Eccles, D., Grifol-Boldu, L., Wehner, D., Owlarn, S., Adell, T., Weidinger, G., Bartscherer, K.	2015	Beta-catenin-dependent control of positional information along the AP body axis in planarians involves a teashirt family member
C. Basquin, Orfila, A. M., Azimzadeh, J.	2015	The planarian Schmidtea mediterranea as a model for studying motile cilia and multiciliated cells
H. Thi-KimVu, Rink, J. C., McKinney, S. A., McClain, M., Lakshmanaperumal, N., Alexander, R., SanchezAlvarado, A.	2015	Stem cells and fluid flow drive cyst formation in an invertebrate excretory organ
K. Wasik, Gurtowski, J., Zhou, X., Ramos, O. M., Delas, M. J., Battistoni, G., Demerdash, O., Falciatori, I., Vizoso, D. B., Smith, A. D., Ladurner, P., Scharer, L., McCombie, W. R., Hannon, G. J., Schatz, M.	2015	Genome and transcriptome of the regeneration-competent flatworm, Macrostomum lignano
H. Brandl, Moon, H. K., Vila-Farré, M., Liu, S. - Y., Henry, I., Rink, J. C.	2016	PlanMine – a mineable resource of planarian biology and biodiversity
K. W. Currie, Brown, D. D. R., Zhu, S., Xu, C. J., Voisin, V., Bader, G. D., Pearson, B. J.	2016	HOX gene complement and expression in the planarian Schmidtea mediterranea
J. Azimzadeh, Basquin C.	2016	Basal bodies across eukaryotes series: basal bodies in the freshwater planarian Schmidtea mediterranea
J. Kathryne Steiner, Tasaki, J., Rouhana, L.	2016	Germline Defects Caused by Smed-boule RNA-Interference Reveal That Egg Capsule Deposition Occurs Independently of Fertilization, Ovulation, Mating, or the Presence of Gametes in Planarian Flatworms
J. Azimzadeh, Basquin C.	2016	Basal bodies across eukaryotes series: basal bodies in the freshwater planarian Schmidtea mediterranea
L. Laure Tsoumtsa, Torre, C., Trouplin, V., Coiffard, B., Gimenez, G., Mege, J. - L., Ghigo, E.	2017	Antimicrobial capacity of the freshwater planarians against S. aureus is under the control of Timeless
A. González-Sastre, De Sousa, N., Adell, T., Salo, E.	2017	The pioneer factor Smed-gata456-1 is required for gut cell differentiation and maintenance in planarians.
E. L. Davies, Lei, K., Seidel, C. W., Kroesen, A. E., McKinney, S. A., Guo, L., Robb, S. Mc, Ross, E. J., Gotting, K., Alvarado, A. Sanchez	2017	Embryonic origin of adult stem cells required for tissue homeostasis and regeneration.
M. J. Hayes	2017	Sulphated glycosaminoglycans support an assortment of planarian rhabdite structures
J. M. Martin-Duran, Ryan, J. F., Vellutini, B., Pang, K., Hejnol, A.	2017	Increased taxon sampling reveals thousands of hidden orthologs in flatworms
L. Leria, Sluys, R., Riutort, M.	2018	Diversification and biogeographic history of the Western Palearctic freshwater flatworm genus Schmidtea (Tricladida: Dugesiidae), with a redescription of Schmidtea nova

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