The Dugesia ryukyuensis database as a molecular resource for studying switching of the reproductive system

Publication Type:Journal Article
Year of Publication:2007
Authors:H. Ishizuka, Maezawa, T., Kawauchi, J., Nodono, H., Hirao, Y., Nishimura, O., Nakagawa, H., Sek, ii, K., Tasaka, K., Tarui, H., Agata, K., Hoshi, M., Kobayashi, K., Sakakibara, Y., Matsumoto, M.
Journal:Zoological Science
Volume:24
Pagination:31-37
Date Published:01/2007
Abstract:

The planarian Dugesia ryukyuensis reproduces both asexually and sexually, and can switch from one mode of reproduction to the other. We recently developed a method for experimentally switching reproduction of the planarian from the asexual to the sexual mode. We constructed a cDNA library from sexualized D. ryukyuensis and sequenced and analyzed 8,988 expressed sequence tags (ESTs). The ESTs were analyzed and grouped into 3,077 non-redundant sequences, leaving 1,929 singletons that formed the basis of unigene sets. Fifty-six percent of the cDNAs analyzed shared similarity (E-value<1E -20) with sequences deposited in NCBI. Highly redundant sequences encoded granulin and actin, which are expressed in the whole body, and other redundant sequences encoded a Vasa-like protein, which is known to be a component of germ-line cells and is expressed in the ovary, and Y-protein, which is expressed in the testis. The sexualized planarian expressed sequence tag database (http://planaria.bio.keio.ac.jp/planaria/) is an open-access, online resource providing access to sequence, classification, clustering, and annotation data. This database should constitute a powerful tool for analyzing sexualization in planarians.

URL:http://www.bioone.org/doi/abs/10.2108/zsj.24.31
DOI:10.2108/zsj.24.31
Scratchpads developed and conceived by (alphabetical): Ed Baker, Katherine Bouton Alice Heaton Dimitris Koureas, Laurence Livermore, Dave Roberts, Simon Rycroft, Ben Scott, Vince Smith